How Can We Help?
You are here:
< Back
A_profile_HMM_modelling_a_multiple_sequence_alignment.png (800 × 421 pixels, file size: 205 KB, MIME type: image/png)
Summary
DescriptionA profile HMM modelling a multiple sequence alignment.png |
English: The boxes in yellow are the match states (M). In the M state the probability distribution is the frequency of the amino acids in that position. The row of diamond shaped states are insert states (I) which are used to model highly variable regions in the alignment. The circular states are delete states (D). These are called silent states since they do not match any residues, and they are there merely to make it possible to jump over one or more columns in the alignment.The final probabilistic model conveys the estimation of the observed frequencies of the amino acids in each position, as well as the transitions between the amino acids derived from the observed occupancy of each position in a multiple sequence alignment.[1] |
Date | |
Source | https://www.ebi.ac.uk/training/online/ |
Author | EMBL-EBI Train Online |
Licensing
This file is licensed under the Creative Commons Attribution-Share Alike 4.0 International license.
- You are free:
- to share – to copy, distribute and transmit the work
- to remix – to adapt the work
- Under the following conditions:
- attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
- share alike – If you remix, transform, or build upon the material, you must distribute your contributions under the same or compatible license as the original.
Items portrayed in this file
depicts
copyright status
copyrighted
copyright license
Creative Commons Attribution-ShareAlike 4.0 International
inception
24 May 2020
media type
image/png
checksum
37653d917c12596c9870aa45a88bc48470b2d824
determination method: SHA-1
data size
209,977 byte
height
421 pixel
width
800 pixel
File history
Click on a date/time to view the file as it appeared at that time.
Date/Time | Thumbnail | Dimensions | User | Comment | |
---|---|---|---|---|---|
current | 22:19, 24 May 2020 | 800 × 421 (205 KB) | Rob Hurt | Uploaded a work by EMBL-EBI Train Online from https://www.ebi.ac.uk/training/online/ with UploadWizard |
File usage
The following pages on the English Wikipedia use this file (pages on other projects are not listed):
Global file usage
The following other wikis use this file:
- Usage on et.wikipedia.org
- Usage on pt.wikipedia.org
Categories
-
Annuals36
-
Bulbs, Corms & Tubers41
-
Ferns27
-
Fruits3
-
Garden Plants23
-
Grasses26
-
Herb17
-
Insects1
-
Mammals1
-
Midwest Native Plants0
-
Northeast Native Plants112
-
Perennials123
-
Rose1
-
Shrubs47
-
Trees112
-
Tropical Plants53
-
Upland Birds5
-
Vines18
-
Viola Tricolor1
-
Water Gardening & Plants9
-
Waterfowl0
-
Wetland Birds0
-
Wetland Plants4
-
Wildbirds172
-
Wildflowers1
-
Woodland Plants29
Table of Contents
Recent Comments